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1.
Genome Biol Evol ; 15(9)2023 09 04.
Artículo en Inglés | MEDLINE | ID: mdl-37690114

RESUMEN

Strict blood-feeding animals are confronted with a strong B-vitamin deficiency. Blood-feeding leeches from the Glossiphoniidae family, similarly to hematophagous insects, have evolved specialized organs called bacteriomes to harbor symbiotic bacteria. Leeches of the Haementeria genus have two pairs of globular bacteriomes attached to the esophagus which house intracellular "Candidatus Providencia siddallii" bacteria. Previous work analyzing a draft genome of the Providencia symbiont of the Mexican leech Haementeria officinalis showed that, in this species, the bacteria hold a reduced genome capable of synthesizing B vitamins. In this work, we aimed to expand our knowledge on the diversity and evolution of Providencia symbionts of Haementeria. For this purpose, we sequenced the symbiont genomes of three selected leech species. We found that all genomes are highly syntenic and have kept a stable genetic repertoire, mirroring ancient insect endosymbionts. Additionally, we found B-vitamin pathways to be conserved among these symbionts, pointing to a conserved symbiotic role. Lastly and most notably, we found that the symbiont of H. acuecueyetzin has evolved an alternative genetic code, affecting a portion of its proteome and showing evidence of a lineage-specific and likely intermediate stage of genetic code reassignment.


Asunto(s)
Sanguijuelas , Providencia , Animales , Providencia/genética , Filogenia , Sanguijuelas/genética , Bacterias/genética , Insectos/genética , Vitaminas , Código Genético , Simbiosis/genética
2.
Mol Biol Rep ; 50(8): 6753-6767, 2023 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-37389700

RESUMEN

BACKGROUND: Herein, we describe a new species of turtle blood-feeding leech, Placobdella nabeulensis sp. nov. from Palearctic North Africa (Tunisia and Algeria). The new species is described based on detailed morphological analyses using light and scanning electron microscopes. RESULTS: Apart from the detailed morphology of the atrium, morphological features alone do not sufficiently separate the species from congeners due to the absence of distinct diagnostic characters. Therefore, we turned to molecular data to better distinguish this new species from other members of the genus and establish a basis for its genetic separation. Four DNA fragments were successfully amplified, including mitochondrial COI and 12S rDNA, as well as nuclear 28S rDNA and histone H3. We then provided the molecular descriptor of the taxon, based on redundant diagnostic nucleotide combinations in DNA sequence alignment within the Folmer region. Results of the phylogenetic analysis and species delimitation methods (ABGD, ASAP, and bPTP) based on the COI locus support the species rank of the Tunisian-Algerian Placobdella. CONCLUSIONS: The new species is most closely related to the European species Placobdella costata (Fr. Müller, 1846) and the present study indicates that Placobdella nabeulensis sp. nov. has likely been confused with the European counterpart in several previous studies. This article is registered at www.zoobank.org under urn:lsid:zoobank.org:pub:4A4B9C1D-2556-430F-8E4B-0CE99F2012F5.


Asunto(s)
Sanguijuelas , Animales , Sanguijuelas/genética , Sanguijuelas/anatomía & histología , Filogenia , ADN Ribosómico , Argelia , Túnez
3.
Mol Phylogenet Evol ; 178: 107648, 2023 01.
Artículo en Inglés | MEDLINE | ID: mdl-36283573

RESUMEN

The Holarctic leech genus Haemopis currently includes 11 species, all of which are macrophagous, as opposed to their more infamous bloodfeeding counterparts among hirudiniform leeches. In spite of their ecological importance as fish food and predators of freshwater invertebrates, there is a paucity of data regarding morphology and genetic variation that might guide future identification efforts for members of the genus. The lack of detailed descriptions of distinguishing morphological features, coupled with the absence of a robust phylogenetic hypothesis for the genus, have conspired to prevent meaningful inferences on the natural history of the group. In an attempt to remedy this, we present new genetic (using COI, 12S rDNA, 28S rDNA and 18S rDNA) data for the majority of the known species diversity within the genus in order to both infer a phylogenetic hypothesis and to introduce authoritative DNA barcodes for the newly collected species. The potential of these barcodes is increased through rigorous morphological investigations of the specimens, with comparisons to the original literature. Our resulting phylogenetic hypothesis is agnostic as to the geographic origin of the genus, with equal probability afforded to both a Nearctic and Palearctic origin. Beyond this, we show that there is a strong tendency towards a barcoding gap within the genus, but that a distinct gap is lacking due to the relatively high genetic variation found within H. marmorata. Taken together, our results shed light on species delimitation within, and evolutionary history of, this often-neglected group of leeches.


Asunto(s)
Anélidos , Sanguijuelas , Animales , Sanguijuelas/genética , Filogenia , ADN Ribosómico/genética , Agua Dulce
4.
Zootaxa ; 5159(2): 265-280, 2022 Jun 29.
Artículo en Inglés | MEDLINE | ID: mdl-36095548

RESUMEN

The leech genus Placobdella harbours 24 currently-recognized species, and only a handful of new species has been described in the past decade. Placobdella akahkway n. sp., a new species of ectoparasitic glossiphoniid leech is herein described from sites in the provinces of Alberta, Saskatchewan, and Manitoba, Canada. Beyond morphological description of the species, a total of 21 specimens (including the five specimens from the type series) were also employed in a phylogenetic analysis using the COI locus. The new species can be distinguished from its congeners by its possession of both compact and diffuse salivary glands. The included specimens of Placobdella akahkway n. sp. form a monophyletic group with high support, and place as the sister taxon to Placobdella kwetlumye.


Asunto(s)
Anélidos , Sanguijuelas , Animales , Canadá , Filogenia
5.
Mol Ecol Resour ; 22(2): 539-553, 2022 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-34402209

RESUMEN

Leeches play important roles in food webs due to their abundance, diversity and feeding habits. Studies using invertebrate-derived DNA (iDNA) extracted from leech gut contents to target vertebrate DNA have focused on the Indo-Pacific region and mainly leveraged the leech family Haemadipsidae, composed of bloodfeeding terrestrial leeches, while predatory, fluid/tissue-feeding and aquatic bloodfeeding species have been largely disregarded. While there is some general knowledge regarding the taxonomic groups that leeches prefer to feed on, detailed taxonomic resolution is missing and, therefore, their potential use for monitoring animals is unknown. In this study, 116 leeches from 12 species (six families) and spanning the three feeding habits were collected in Mexico and Canada. We used DNA metabarcoding to investigate their diet and assess their potential use for biodiversity monitoring. We detected vertebrates from five orders including fish, turtles and birds in the diet of aquatic bloodfeeding leeches; eight invertebrate orders of annelids, arthropods and molluscs in leeches that feed on body fluids and tissues; and 10 orders of invertebrates belonging to Arthropoda and Annelida, as well as one vertebrate and one parasitic nematode, in predatory leeches. These results show the potential use of iDNA from aquatic bloodfeeding leeches for retrieving vertebrate taxa, and from predatory and fluid-feeding leeches for invertebrates. Our study provides information about the dietary range of freshwater leeches and one terrestrial leech and contributes proof-of-concept for the use of these leeches for animal monitoring, expanding our knowledge of the use of iDNA from leech gut contents to North America.


Asunto(s)
Anélidos , Sanguijuelas , Animales , Anélidos/genética , Biodiversidad , Código de Barras del ADN Taxonómico , Vertebrados/genética
6.
Anim Reprod Sci ; 232: 106816, 2021 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-34329918

RESUMEN

Some species of leeches migrate into waterfowl nests and use these both as general habitats and to deposit cocoons, but ecological associations between leeches and birds are not well understood. In the present study, characteristics of waterfowl nests both as living area for leeches (Hirudinea) and as reproduction areas for select hirudinid leeches (Hirudo verbana and Haemopis sanguisuga) was investigated in both natural and controlled laboratory conditions. A total of 48 leeches were detected in 23 of the 51 nests surveyed in natural habitats. The leeches were detected more frequently but there were less dense populations in the nests of the great crested grebe (Podiceps cristatus) (frequency: 57 %, population density: 0.71 ± 0.76 leeches/nest), and leeches were detected less frequently but there were more dense populations in the nests of coots (Fulica atra) (frequency: 36 %, population density: 0.91 ± 1.70 leeches/nest). Although the hirudinid leeches naturally reproduce between June and September, cocoons were only detected in August and September, when the nests were not actively used by the waterfowl and when water depths were less. In laboratory conditions, gravid medicinal leeches prefer moist peat rather than waterfowl nests for cocoon deposition. Results from the present study indicate leeches more frequently use the nests of coots, which have both dry and wet layers, compared to the nests of the great crested grebe, which have only a wet layer. Leeches were also found to be more prevalent in bird nests during spring months, during the reproductive periods of the waterfowl.


Asunto(s)
Anseriformes/fisiología , Sanguijuelas/fisiología , Animales , Conducta Animal , Reproducción , Estaciones del Año
7.
Genome Biol Evol ; 13(1)2021 01 07.
Artículo en Inglés | MEDLINE | ID: mdl-33527140

RESUMEN

Bloodfeeding is employed by many parasitic animals and requires specific innovations for efficient feeding. Some of these innovations are molecular features that are related to the inhibition of hemostasis. For example, bloodfeeding insects, bats, and leeches release proteins with anticoagulatory activity through their salivary secretions. The antistasin-like protein family, composed of serine protease inhibitors with one or more antistasin-like domains, is tightly linked to inhibition of hemostasis in leeches. However, this protein family has been recorded also in non-bloodfeeding invertebrates, such as cnidarians, mollusks, polychaetes, and oligochaetes. The present study aims to 1) root the antistasin-like gene tree and delimit the major orthologous groups, 2) identify potential independent origins of salivary proteins secreted by leeches, and 3) identify major changes in domain and/or motif structure within each orthologous group. Five clades containing leech antistasin-like proteins are distinguishable through rigorous phylogenetic analyses based on nine new transcriptomes and a diverse set of comparative data: the trypsin + leukocyte elastase inhibitors clade, the antistasin clade, the therostasin clade, and two additional, unnamed clades. The antistasin-like gene tree supports multiple origins of leech antistasin-like proteins due to the presence of both leech and non-leech sequences in one of the unnamed clades, but a single origin of factor Xa and trypsin + leukocyte elastase inhibitors. This is further supported by three sequence motifs that are exclusive to antistasins, the trypsin + leukocyte elastase inhibitor clade, and the therostasin clade, respectively. We discuss the implications of our findings for the evolution of this diverse family of leech anticoagulants.


Asunto(s)
Anélidos/genética , Anélidos/metabolismo , Evolución Molecular , Hormonas de Invertebrados/genética , Hormonas de Invertebrados/metabolismo , Sanguijuelas/genética , Animales , Anticoagulantes/química , Factor Xa/genética , Hemostasis , Filogenia , Proteínas y Péptidos Salivales/genética , Inhibidores de Serina Proteinasa/genética , Transcriptoma
8.
Sci Rep ; 10(1): 9885, 2020 06 18.
Artículo en Inglés | MEDLINE | ID: mdl-32555498

RESUMEN

The European medicinal leech has been used for medicinal purposes for millennia, and continues to be used today in modern hospital settings. Its utility is granted by the extremely potent anticoagulation factors that the leech secretes into the incision wound during feeding and, although a handful of studies have targeted certain anticoagulants, the full range of anticoagulation factors expressed by this species remains unknown. Here, we present the first draft genome of the European medicinal leech, Hirudo medicinalis, and estimate that we have sequenced between 79-94% of the full genome. Leveraging these data, we searched for anticoagulation factors across the genome of H. medicinalis. Following orthology determination through a series of BLAST searches, as well as phylogenetic analyses, we estimate that fully 15 different known anticoagulation factors are utilized by the species, and that 17 other proteins that have been linked to antihemostasis are also present in the genome. We underscore the utility of the draft genome for comparative studies of leeches and discuss our results in an evolutionary context.


Asunto(s)
Anticoagulantes/metabolismo , Genoma , Hirudo medicinalis/genética , Animales , Anticoagulantes/clasificación , ADN/química , ADN/genética , ADN/metabolismo , Variaciones en el Número de Copia de ADN/genética , Hemostasis , Hirudinas/clasificación , Hirudinas/genética , Hirudinas/metabolismo , Compuestos Orgánicos/clasificación , Compuestos Orgánicos/metabolismo , Filogenia , Secuencias Repetidas en Tándem/genética
9.
Mol Phylogenet Evol ; 143: 106688, 2020 02.
Artículo en Inglés | MEDLINE | ID: mdl-31747540

RESUMEN

Leeches of the family Erpobdellidae are important members of benthic freshwater environments, where they are voracious predators of other invertebrates and an important source of nutrition for several species of vertebrates. Beset by a lack of reliable diagnostic morphological characters and destructive identification processes, molecular approaches have, in recent years, been employed to illuminate the relationships within this family, and DNA barcoding has been employed for identification purposes. However, an understanding of the levels of genetic variation across the geographic distributions of members of the genus is still lacking. Herein, we sequence the mitochondrial COI locus for 249 newly collected North American individuals, representing 5 species, as well as mitochondrial 12S rDNA, nuclear 18S rDNA, and nuclear 28S rDNA for a select subset of these. Our COI dataset was leveraged to detect potential cryptic species, and to calculate genetic distances as a proxy for the degree of gene flow between populations. Augmented by numerous sequences from GenBank, the multilocus dataset was used to reconstruct a phylogenetic hypothesis for worldwide members of the genus. Beyond corroborating previous overarching phylogenetic frameworks, our results show that an undescribed species that is morphologically and genetically similar to Erpobdella punctata exists in sympatry with this species - the new species has likely been overlooked in previous studies due to its morphological similarity with Erpobdella punctata. Erpobdella bucera is reported from Canada for the first time; and Erpobdella microstoma is newly reported from Saskatchewan and placed in a phylogeny for the first time. Finally, we find evidence for genetic structure in both E. cf. punctata and Erpobdella obscura that is correlated with major river drainage basin boundaries in North America.


Asunto(s)
Anélidos/genética , Variación Genética , Animales , Anélidos/clasificación , Biodiversidad , Canadá , Complejo IV de Transporte de Electrones/clasificación , Complejo IV de Transporte de Electrones/genética , Haplotipos , Mitocondrias/genética , Filogenia , ARN Ribosómico/clasificación , ARN Ribosómico/genética
10.
Zootaxa ; 4671(1): zootaxa.4671.1.1, 2019 Sep 16.
Artículo en Inglés | MEDLINE | ID: mdl-31716590

RESUMEN

The description of Helobdella stagnalis (Linnaeus, 1758) has emphasized the presence of a nuchal, chitinous scute located on the dorsal surface in the first third of the body as the diagnostic character for the species. Historically, identifications of species of Helobdella have relied heavily on this character and, as a result, Helobdella stagnalis has been reported from an inordinately broad geographic range, including Europe, Asia, Africa, North America, and South America. In addition to a few earlier investigations, a recent analysis showed that great genetic distances (orders of magnitude greater than previous estimations of intraspecific divergence in leeches) are present between scute-bearing specimens identified as H. stagnalis from Europe and North America, implying that H. stagnalis does not occur in North America. The present study expands the geographic boundaries of taxon sampling for both European and North American taxa, and re-examines the phylogenetic relationships and cytochrome c oxidase subunit I (COI) variation within scute-bearing species of the genus Helobdella. Our analyses include specimens putatively identified as "Helobdella stagnalis" from Sweden, Norway, Iceland, England, France, Italy, Slovenia, Turkey, Russia, and Iran, as well as numerous localities covering Canada and the USA. Our results corroborate previous studies in that European and west Asian specimens form a clade, including the neotype, which is separate from North American taxa. To alleviate future taxonomic confusion, we redescribe H. stagnalis and designate a neotype from the inferred type locality. The designation of a neotype stabilizes the taxonomy of scute-bearing leeches of the genus Helobdella and enables us to definitively correct erroneous identifications reported in previous studies. We also note that at least four lineages of scute-bearing, North American species of Helobdella lack formal descriptions.


Asunto(s)
Código de Barras del ADN Taxonómico , Sanguijuelas , Animales , Sanguijuelas/genética , América del Norte , Filogenia
11.
J Parasitol ; 105(4): 587-597, 2019 08.
Artículo en Inglés | MEDLINE | ID: mdl-31414949

RESUMEN

A new species of medicinal leech, Macrobdella mimicus n. sp., is described from specimens collected in Maryland; this is the first description of a North American macrobdellid since 1975. Superficially, the new species resembles the well-known Macrobdella decora, as both species possess 4 accessory pores arranged symmetrically on the ventral surface, yet the new species is distinguished from M. decora in possessing 4-4½ annuli (rather than 3½) between the gonopores and 4 annuli (rather than 5 annuli) between the female gonopore and the first pair of accessory pores. Phylogenetic analyses, based on 2 mitochondrial and 2 nuclear loci for a set of closely related taxa, confirms the placement of the new species within the family Macrobdellidae and places it as the sister taxon to M. decora and M. diplotertia.


Asunto(s)
Sanguijuelas/clasificación , Filogenia , Animales , Complejo IV de Transporte de Electrones/genética , Georgia , Sanguijuelas/genética , Sanguijuelas/ultraestructura , Maryland , Microscopía Electrónica de Rastreo , NAD/genética , North Carolina , South Carolina , Humedales
12.
Mitochondrial DNA A DNA Mapp Seq Anal ; 30(6): 749-763, 2019 08.
Artículo en Inglés | MEDLINE | ID: mdl-31271070

RESUMEN

Placobdella rugosa has long presented challenges to leech biologists. Its extreme morphological variability and similarity to some congeneric species has confounded classification for over a century. Recent molecular analyses revealed a surprising lack of genetic variation among morphologically disparate, geographically widespread specimens of P. rugosa. Given the lack of any obvious mechanism by which this species could disperse between distant habitats, it was expected that widespread populations would be genetically isolated from each other. In the present study, we investigate the relationship between geographic distance and genetic diversity in P. rugosa using COI sequences from specimens collected across Canada and the United States. Although we find preliminary evidence for a barrier to gene flow between eastern and western collecting localities, our vastly expanded dataset largely corroborates prior studies, showing minimal phylogeographic signal among the sequences and negligible levels of genetic isolation by distance. A recent range expansion following the last ice age and/or host-mediated dispersal are discussed as potential explanations for this unexpected phylogeographic pattern.


Asunto(s)
Código de Barras del ADN Taxonómico , Complejo IV de Transporte de Electrones/genética , Genética de Población , Genoma Mitocondrial/genética , Sanguijuelas/genética , Animales , Canadá , Variación Genética/genética , Filogenia , Especificidad de la Especie , Estados Unidos
13.
Parasitology ; 146(10): 1338-1346, 2019 09.
Artículo en Inglés | MEDLINE | ID: mdl-31148528

RESUMEN

Bloodfeeding requires several adaptations that allow the parasite to feed efficiently. Leeches and other hematophagous animals have developed different mechanisms to inhibit hemostasis, one of the main barriers imposed by their hosts. Limnobdella mexicana is a member of the leech family Praobdellidae, a family of host generalists known for their preference to attach on mucosal membranes of mammals, such as those in nasopharyngeal cavities, bladders and ocular orbits. Previous studies have hypothesized a positive relationship between diversity of anticoagulants and diversity of hosts in bloodfeeding leeches. However, orthology determination of putative anticoagulants and the lack of standardization of sequencing effort and method hinder comparisons between publicly available transcriptomes generated in different laboratories. In the present study, we examine the first transcriptome of a praobdellid leech and identify 15 putative anticoagulants using a phylogeny-based inference approach, amino-acid conservation, Pfam domains and BLAST searches. Our phylogenetic analyses suggest that the ancestral leech was able to inhibit factor Xa and that some hirudins that have been reported in previous studies on leech anticoagulants may not be orthologous with the archetypal hirudin.


Asunto(s)
Inhibidores del Factor Xa/metabolismo , Variación Genética , Sanguijuelas/metabolismo , Proteínas y Péptidos Salivales/biosíntesis , Transcriptoma , Animales , Biología Computacional , Sanguijuelas/genética , Filogenia , Proteínas y Péptidos Salivales/clasificación , Proteínas y Péptidos Salivales/genética
14.
Ecol Evol ; 9(8): 4706-4719, 2019 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-31031937

RESUMEN

The medicinal utility of leeches has been demonstrated through decades of use in modern hospital settings, mainly as relievers of venous congestion following flap or digit replantation surgery. In the present study, we sequence and annotate (through BLAST- and Gene Ontology-based approaches) the salivary transcriptome of the nonblood feeding hirudinid Whitmania pigra and assess the differential gene expression of anticoagulation factors (through both quantitative real-time PCR [qRT-PCR] and in silico-based methods) during feeding and fasting conditions. This was done in order to evince the diversity of putative anticoagulation factors, as well as estimate the levels of upregulation of genes immediately after feeding. In total, we found sequences with demonstrated orthology (via both phylogenetic analyses and BLAST-based approaches) to seven different proteins that have previously been linked to anticoagulatory capabilities-eglin C, bdellin, granulin, guamerin, hyaluronidase, destabilase I, and lipocalin. All of these were recovered from leeches both in the fasting and in the feeding conditions, but all show signs of upregulation in the feeding leeches. Interestingly, our RNA-seq effort, coupled with a hypergeometric test, indicated that the differentially expressed genes were disproportionately involved in three main immunological pathways (endocytosis, peroxisome regulation, and lysosome regulation). The results and implications of the finding of anticoagulants in this nonblood feeding leech and the putative upregulation of anticoagulation factors after feeding are briefly discussed in an evolutionary context.

15.
Zootaxa ; 4433(3): 561-573, 2018 Jun 13.
Artículo en Inglés | MEDLINE | ID: mdl-30313219

RESUMEN

Two new species of Tubificoides (subfamily Tubificinae), T. charlotteae n. sp. and T. mackiei n. sp., are described based on morphological analyses. Both species were flagged as potentially cryptic in a previous investigation, based on both mitochondrial and nuclear sequence data. Tubificoides charlotteae n. sp., known only from an intertidal site in southern Spain, is characterized by the lack of cuticular papillation, the possession of several needle-like hair chaetae in dorsal bundles, a cone-shaped penis sheath, and a rather large, muscular penial sac. It strongly resembles the north-west European, largely sublittoral species T. amplivasatus, but differs from this species in terms of body size, width of vas deferens, and the shape and size of both the ejaculatory duct and penial sac. Tubificoides mackiei n. sp., collected from the southeast coast of Norway and the west coast of Sweden, is characterized by the lack of cuticular papillae and hair chaetae, and the possession of a rather long penis sheath with a wide terminal opening. It shares several morphological features with the sympatric species Tubificoides pseudogaster, but is distinguished from the latter by the detailed morphology and length of the penis sheaths, the width of the atrium, and the lower maximal number of bifid chaetae in dorsal preclitellar bundles. The utility of an integrative comparative approach, combining molecules and morphology, for the identification and delineation of new taxa within Tubificoides is briefly discussed.


Asunto(s)
Oligoquetos , Animales , Tamaño Corporal , Masculino , Noruega , España , Suecia
16.
J Parasitol ; 104(3): 210-220, 2018 06.
Artículo en Inglés | MEDLINE | ID: mdl-29505345

RESUMEN

Leeches (Annelida: Hirudinea) possess powerful salivary anticoagulants and, accordingly, are frequently employed in modern, authoritative medicine. Members of the almost exclusively marine family Piscicolidae account for 20% of leech species diversity, and they feed on host groups (e.g., sharks) not encountered by their freshwater and terrestrial counterparts. Moreover, some species of Ozobranchidae feed on endangered marine turtles and have been implicated as potential vectors for the tumor-associated turtle herpesvirus. In spite of their ecological importance and unique host associations, there is a distinct paucity of data regarding the salivary transcriptomes of either of these families. Using next-generation sequencing, we profiled transcribed, putative anticoagulants and other salivary bioactive compounds that have previously been linked to blood feeding from 7 piscicolid species (3 elasmobranch feeders; 4 non-cartilaginous fish feeders) and 1 ozobranchid species (2 samples). In total, 149 putative anticoagulants and bioactive loci were discovered in varying constellations throughout the different samples. The putative anticoagulants showed a broad spectrum of described antagonistic pathways, such as inhibition of factor Xa and platelet aggregation, which likely have similar bioactive roles in marine fish and turtles. A transcript with homology to ohanin, originally isolated from king cobras, was found in Cystobranchus vividus but is otherwise unknown from leeches. Estimation of selection pressures for the putative anticoagulants recovered evidence for both positive and purifying selection along several isolated branches in the gene trees, and positive selection was also estimated for a few select codons in a variety of marine species. Similarly, phylogenetic analyses of the amino acid sequences for several anticoagulants indicated divergent evolution.


Asunto(s)
Anticoagulantes/metabolismo , Sanguijuelas/metabolismo , Transcriptoma , Animales , Anticoagulantes/química , Anticoagulantes/clasificación , Biodiversidad , Evolución Biológica , ADN Complementario/química , ADN Complementario/metabolismo , Peces/parasitología , Secuenciación de Nucleótidos de Alto Rendimiento , Interacciones Huésped-Parásitos , Sanguijuelas/clasificación , Sanguijuelas/enzimología , Sanguijuelas/genética , Sistemas de Lectura Abierta , Filogenia , Glándulas Salivales/anatomía & histología , Glándulas Salivales/enzimología , Glándulas Salivales/metabolismo , Tortugas/parasitología , Secuenciación del Exoma
17.
Mitochondrial DNA A DNA Mapp Seq Anal ; 29(5): 765-771, 2018 07.
Artículo en Inglés | MEDLINE | ID: mdl-28752773

RESUMEN

We evaluated the extent of intraspecific and interspecific genetic distances for two highly diverse infraorders of Odonata: Anisoptera and Zygoptera. All cytochrome c oxidase subunit I sequences (cox1), the region chosen for zoological DNA barcoding, present in GenBank for each infraorder were downloaded and curated. For Anisoptera, the final dataset consisted of 2,961 individual cox1 sequences for 536 species and the equivalent numbers for Zygoptera were 2,477 sequences for 497 species. More than 7 million individual genetic comparisons were made and the results indicated that there is a tendency towards a barcoding gap, but that the size of the gap may not be sufficient to robustly infer identities for some taxa. DNA barcoding may be of less use for some odonate taxa, perhaps pertaining to misidentifications in global databases. However, at local scales or with more confined taxonomical sampling, this tool may yet be beneficial in identifying these charismatic organisms.


Asunto(s)
ADN Mitocondrial/genética , Complejo IV de Transporte de Electrones/genética , Genoma Mitocondrial/genética , Odonata/genética , Animales , ADN , Código de Barras del ADN Taxonómico/métodos , Especiación Genética , Variación Genética , Mitocondrias/genética , Filogenia , Análisis de Secuencia de ADN
18.
PLoS One ; 12(8): e0182283, 2017.
Artículo en Inglés | MEDLINE | ID: mdl-28763495

RESUMEN

We present a DNA barcoding study of Neotropical odonates from the Upper Plata basin, Brazil. A total of 38 species were collected in a transition region of "Cerrado" and Atlantic Forest, both regarded as biological hotspots, and 130 cytochrome c oxidase subunit I (COI) barcodes were generated for the collected specimens. The distinct gap between intraspecific (0-2%) and interspecific variation (15% and above) in COI, and resulting separation of Barcode Index Numbers (BIN), allowed for successful identification of specimens in 94% of cases. The 6% fail rate was due to a shared BIN between two separate nominal species. DNA barcoding, based on COI, thus seems to be a reliable and efficient tool for identifying Neotropical odonate specimens down to the species level. These results underscore the utility of DNA barcoding to aid specimen identification in diverse biological hotspots, areas that require urgent action regarding taxonomic surveys and biodiversity conservation.


Asunto(s)
Biodiversidad , Código de Barras del ADN Taxonómico , Bases de Datos Genéticas , Complejo IV de Transporte de Electrones/genética , Variación Genética , Odonata/genética , Animales , Brasil , Geografía , Filogenia , Análisis de Secuencia de ADN , Especificidad de la Especie
19.
Mol Phylogenet Evol ; 114: 234-248, 2017 09.
Artículo en Inglés | MEDLINE | ID: mdl-28666786

RESUMEN

Placobdella is a genus of blood-feeding leeches in the family Glossiphoniidae. Historically, species of Placobdella have posed difficulty for systematists owing to a lack of informative morphological characters and the preponderance of inadequate or incomplete species descriptions. Here, we conduct a phylogenetic analysis of 55 individuals representing 20 of the 24 currently recognized nominal taxa using COI, ND1, 12S rDNA and ITS sequences under parsimony, maximum likelihood and Bayesian inference. We also examine the isolated COI phylogeny for the genus using an expanded dataset encompassing three additional species not included in the concatenated dataset. Finally, we assess genetic variation at the COI locus to validate initial specimen identifications and estimate how COI variation may reflect species boundaries. We conclude that Placobdella is a monophyletic group that places as the sister group to a clade formed by the genera Haementeria and Helobdella. We discuss the evolutionary implications of several internal relationships that are robustly resolved by all three optimality criteria, paying particular attention to the apparent fluidity of morphological characters exhibited by members of Placobdella. We also find preliminary evidence for the presence of cryptic and undescribed diversity within the genus.


Asunto(s)
Sanguijuelas/clasificación , Animales , Teorema de Bayes , ADN/química , ADN/aislamiento & purificación , ADN/metabolismo , Complejo IV de Transporte de Electrones/clasificación , Complejo IV de Transporte de Electrones/genética , Variación Genética , Sanguijuelas/genética , Filogenia , ARN Ribosómico/clasificación , ARN Ribosómico/genética , Análisis de Secuencia de ADN
20.
Mol Biol Evol ; 33(10): 2544-54, 2016 10.
Artículo en Inglés | MEDLINE | ID: mdl-27343289

RESUMEN

Harpellales, an early-diverging fungal lineage, is associated with the digestive tracts of aquatic arthropod hosts. Concurrent with the production and annotation of the first four Harpellales genomes, we discovered that Zancudomyces culisetae, one of the most widely distributed Harpellales species, encodes an insect-like polyubiquitin chain. Ubiquitin and ubiquitin-like proteins are universally involved in protein degradation and regulation of immune response in eukaryotic organisms. Phylogenetic analyses inferred that this polyubiquitin variant has a mosquito origin. In addition, its amino acid composition, animal-like secondary structure, as well as the fungal nature of flanking genes all further support this as a horizontal gene transfer event. The single-copy polyubiquitin gene from Z. culisetae has lower GC ratio compared with homologs of insect taxa, which implies homogenization of the gene since its putatively ancient transfer. The acquired polyubiquitin gene may have served to improve important functions within Z. culisetae, by perhaps exploiting the insect hosts' ubiquitin-proteasome systems in the gut environment. Preliminary comparisons among the four Harpellales genomes highlight the reduced genome size of Z. culisetae, which corroborates its distinguishable symbiotic lifestyle. This is the first record of a horizontally transferred ubiquitin gene from disease-bearing insects to the gut-dwelling fungal endobiont and should invite further exploration in an evolutionary context.


Asunto(s)
Culicidae/microbiología , Hongos/genética , Transferencia de Gen Horizontal , Ubiquitina/genética , Animales , Evolución Biológica , Tracto Gastrointestinal/microbiología , Genoma , Fenotipo , Filogenia , Simbiosis/genética , Ubiquitinación/genética
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